Isolate genotype
| Isolate |
score all |
pan genome comparison |
score_identity |
score_avg |
pan genome count |
country |
state |
city |
collection_date |
cluster |
species |
species_match |
contig_count |
N50 |
largest_contig |
ST |
virulence_score |
resistance_score |
num_resistance_classes |
num_resistance_genes |
Yersiniabactin |
YbST |
"col"ibactin |
CbST |
Aerobactin |
AbST |
Salmochelin |
SmST |
rmpA |
rmpA2 |
wzi |
K_locus |
K_locus_problems |
K_locus_confidence |
K_locus_identity |
K_locus_missing_genes |
Chr_ST |
gapA |
infB |
mdh |
pgi |
phoE |
rpoB |
tonB |
ybtS |
ybtX |
ybtQ |
ybtP |
ybtA |
irp2 |
irp1 |
ybtU |
ybtT |
ybtE |
fyuA |
clbA |
clbB |
clbC |
clbD |
clbE |
clbF |
clbG |
clbH |
clbI |
clbL |
clbM |
clbN |
clbO |
clbP |
clbQ |
AGly |
COL |
Fcyn |
Flq |
Gly |
MLS |
Ntmdz |
Phe |
Rif |
Sul |
Tet |
Tmt |
Bla |
Bla_Carb |
Bla_ESBL |
Bla_ESBL_inhR |
Bla_broad |
Bla_broad_inhR |
MEM |
IPM |
ETP |
FOX |
FEP |
CAZ |
CAZ-AVI |
CLC |
CTX |
CTC |
CRO |
CSL |
TZP |
AMK |
CIP |
LVX |
MIN |
COL |
TGC |
CHL |
FOS |
ATM |
ATM-AVI |
|
Resistance genes
Virulence genes
